PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GRMZM2G047999_P01
Common NameEREB178
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Tripsacinae; Zea
Family ERF
Protein Properties Length: 301aa    MW: 32805.8 Da    PI: 4.3992
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GRMZM2G047999_P01genomeMaizeSequenceView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.1e-1872123156
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                        ++y GVr+++ +gr++AeIrdp +   + r++lg+f+taeeAa a+++a+++++g+
  GRMZM2G047999_P01  72 TRYLGVRRRP-WGRYAAEIRDPAT---KERHWLGTFDTAEEAAIAYDRAARNIRGA 123
                        5799******.**********843...4*************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.16E-2972131No hitNo description
SMARTSM003801.6E-3273136IPR001471AP2/ERF domain
SuperFamilySSF541715.75E-2173130IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.4E-2873130IPR001471AP2/ERF domain
PfamPF008474.8E-1173122IPR001471AP2/ERF domain
PROSITE profilePS5103221.45673130IPR001471AP2/ERF domain
PRINTSPR003671.6E-87485IPR001471AP2/ERF domain
PRINTSPR003671.6E-896112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MQQQQPLSLR LSALASTTAT NNSLYSFSVC VLLCSCMDFS YLFSSSSSEK KSSKRLQQQQ  60
LLQQQDNNSN ETRYLGVRRR PWGRYAAEIR DPATKERHWL GTFDTAEEAA IAYDRAARNI  120
RGANARTNFA YPDLPPGSSV TPYLSPDLSA DQLQHYYYAN NDPVAPAADQ PPTPACDQSA  180
HGGAAGTEAY QYYHHVPVEM MSSYGAAEGA SVMDYGGNPE MGMYFEGNGS GGDDDRAWCE  240
ASSELLFGGY SDDAAAAPAN ASHGMYFEEG YVHSPMFSPM PAADEVDGFQ LGGPSSSSYY  300
Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-1874129359ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID
Expression AtlasGRMZM2G047999
Cis-element ? help Back to Top
SourceLink
PlantRegMapGRMZM2G047999_P01
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7278670.0KJ727867.1 Zea mays clone pUT5959 AP2-EREBP transcription factor (EREB178) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008647052.10.0PREDICTED: ethylene-responsive transcription factor LEP-like
TrEMBLA0A060D6U50.0A0A060D6U5_MAIZE; AP2-EREBP transcription factor (Fragment)
STRINGGRMZM2G047999_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18853397
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28160.11e-22ERF family protein